PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G007900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 376aa    MW: 39856.4 Da    PI: 4.3377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G007900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.31.9e-16181393127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyat..gkrknratksgyWkatgk 88 
                          G+rFhPt ee ++ yL++ ++g++  +++ +i+++ +y++ P dL +++    ++++ yf+s+ ++   +  g r +ra++   W +   
  Brast05G007900.1.p  18 FGLRFHPTAEEAISVYLRRWIAGDPaPDAAGIIHHAAVYSLPPADLAAAFPRlpRTHDRYFYSTCRRVPIRggGYRVSRAVAGVSWGSNT- 107
                         79***********************5555667**************85333333566889999998876642378*****99999*9664. PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +k+v ++ +ge  g  +tL +         ktdW+m+e++
  Brast05G007900.1.p 108 NKPVEDAmTGEXLGFVETLKYG--------KTDWLMEEFH 139
                         4777774466667777777765........9********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-2012145IPR003441NAC domain
PROSITE profilePS5100517.72416163IPR003441NAC domain
PfamPF023652.2E-919139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAAPLPSTVL SPIAALSFGL RFHPTAEEAI SVYLRRWIAG DPAPDAAGII HHAAVYSLPP  60
ADLAAAFPRL PRTHDRYFYS TCRRVPIRGG GYRVSRAVAG VSWGSNTNKP VEDAMTGEXL  120
GFVETLKYGK TDWLMEEFHR LPEDAAADGA AERQAAMADA QQRMPPSSPR NRRVMALPVL  180
PEPAPVKKRA APVAEPPRPK KRTRAAAPAA SPVMASPPAP PAVPRVALRQ LPRPSWCPPP  240
PAGLLALEPR RPAPAVASAA ZXSPAAAAAH DELVALVLSG VEEEDDSAAG QEDDDDQDLG  300
DFASALETDL ETTEEDGGGD AGSRSLEGLA ADERGDDDIA MDMDDVFNDL GDEEDDGDGA  360
WKSIPLSDYT DLQYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162172RMPPSSPRNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239312.11e-124PREDICTED: translation initiation factor IF-2-like
TrEMBLA0A0Q3EQ521e-122A0A0Q3EQ52_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2262136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.19e-12NAC domain containing protein 50